Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
adhRHTH-type transcriptional regulator AdhR. (155 aa)    
Predicted Functional Partners:
ydfG_1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.689
trmL
tRNA (cytidine(34)-2'-O)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.557
todS
Sensor histidine kinase TodS.
  
 
 0.541
AMY55523.1
Hypothetical protein.
   
 
 0.506
tipA_1
HTH-type transcriptional activator TipA.
  
     0.447
bmrR_3
Multidrug-efflux transporter 1 regulator.
  
     0.427
AMY53063.1
Hypothetical protein.
  
     0.426
mta_2
HTH-type transcriptional activator mta.
  
     0.419
pipB2
Secreted effector protein pipB2.
       0.415
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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