sigD_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sigD_1

ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)

Predicted Functional Partners:

AMY51549.1

0.906

rpoB

0.799

rpoC

0.799

rpoA

0.636

ripA_2

0.603

sigE

0.588

AMY53930.1

0.585

AMY51551.1

0.549

sigL

0.518

lytC_2

0.508

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY51549.1	AMY51551.1	A3L23_00188	A3L23_00190	Hypothetical protein.	Hypothetical protein.	0.620
AMY51549.1	ripA_2	A3L23_00188	A3L23_04320	Hypothetical protein.	Peptidoglycan endopeptidase RipA.	0.462
AMY51549.1	sigD_1	A3L23_00188	A3L23_00189	Hypothetical protein.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.906
AMY51551.1	AMY51549.1	A3L23_00190	A3L23_00188	Hypothetical protein.	Hypothetical protein.	0.620
AMY51551.1	sigD_1	A3L23_00190	A3L23_00189	Hypothetical protein.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.549
AMY53930.1	sigD_1	A3L23_02593	A3L23_00189	Hypothetical protein.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.585
lytC_2	ripA_2	A3L23_04795	A3L23_04320	N-acetylmuramoyl-L-alanine amidase LytC.	Peptidoglycan endopeptidase RipA.	0.555
lytC_2	sigD_1	A3L23_04795	A3L23_00189	N-acetylmuramoyl-L-alanine amidase LytC.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.508
ripA_2	AMY51549.1	A3L23_04320	A3L23_00188	Peptidoglycan endopeptidase RipA.	Hypothetical protein.	0.462
ripA_2	lytC_2	A3L23_04320	A3L23_04795	Peptidoglycan endopeptidase RipA.	N-acetylmuramoyl-L-alanine amidase LytC.	0.555
ripA_2	sigD_1	A3L23_04320	A3L23_00189	Peptidoglycan endopeptidase RipA.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.603
rpoA	rpoB	A3L23_00223	A3L23_02932	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoC	A3L23_00223	A3L23_02933	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	sigD_1	A3L23_00223	A3L23_00189	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.636
rpoA	sigE	A3L23_00223	A3L23_03112	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.	0.788
rpoA	sigL	A3L23_00223	A3L23_02910	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ECF RNA polymerase sigma factor SigL; Belongs to the sigma-70 factor family. ECF subfamily.	0.793
rpoB	rpoA	A3L23_02932	A3L23_00223	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoC	A3L23_02932	A3L23_02933	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	sigD_1	A3L23_02932	A3L23_00189	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.	0.799
rpoB	sigE	A3L23_02932	A3L23_03112	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.	0.872

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About