Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eccB3ESX-3 secretion system protein eccB3. (484 aa)    
Predicted Functional Partners:
eccC3
ESX-3 secretion system protein EccC3.
 
 
 0.993
AMY51578.1
Thermophilic serine proteinase; Belongs to the peptidase S8 family.
 
 
 0.914
eccE1
ESX-1 secretion system protein EccE1.
 
     0.896
eccD5
ESX-5 secretion system protein eccD5.
 
 
 0.859
AMY53346.1
Putative membrane protein.
  
    0.739
AMY53374.1
Hypothetical protein.
 
 
 0.715
AMY53923.1
Hypothetical protein.
  
     0.690
AMY55828.1
Hypothetical protein.
  
     0.688
hbhA
Heparin-binding hemagglutinin.
  
     0.676
AMY56016.1
Hypothetical protein.
  
     0.668
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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