Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eccE1ESX-1 secretion system protein EccE1. (563 aa)    
Predicted Functional Partners:
eccB3
ESX-3 secretion system protein eccB3.
 
     0.896
AMY51549.1
Hypothetical protein.
  
     0.751
eccD5
ESX-5 secretion system protein eccD5.
 
     0.750
AMY53339.1
Hypothetical protein.
  
     0.736
AMY53346.1
Putative membrane protein.
  
     0.728
AMY53900.1
Hypothetical protein.
  
     0.728
AMY53245.1
Hypothetical protein.
  
     0.721
bamB
Outer membrane protein assembly factor BamB.
  
     0.719
AMY54321.1
Hypothetical protein.
  
     0.708
AMY53328.1
Hypothetical protein.
  
     0.707
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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