Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51621.1Hypothetical protein. (164 aa)    
Predicted Functional Partners:
tyrA_1
T-protein.
  
    0.800
AMY51623.1
Hypothetical protein.
       0.691
AMY54996.1
Hypothetical protein.
  
     0.643
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
  
 0.596
mbtB
Phenyloxazoline synthase MbtB.
  
 
 0.566
desA3_4
Stearoyl-CoA 9-desaturase.
  
    0.563
fadH
2,4-dienoyl-CoA reductase [NADPH].
 
  
 0.537
AMY54994.1
Stearoyl-CoA 9-desaturase electron transfer partner.
 
  
 0.529
desA3_2
Stearoyl-CoA 9-desaturase.
  
    0.514
acr1_2
Fatty acyl-CoA reductase.
 
   
 0.506
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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