Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY51632.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
garK_1
Glycerate 2-kinase; Belongs to the glycerate kinase type-1 family.
       0.581
ssuD_1
Alkanesulfonate monooxygenase.
  
     0.520
sdcS
Sodium-dependent dicarboxylate transporter SdcS.
       0.517
tycC_2
Tyrocidine synthase 3.
 
    0.509
AMY53220.1
Putative pyridoxine/pyridoxamine 5'-phosphate oxidase.
  
   
 0.499
AMY55580.1
Hypothetical protein.
  
    0.483
tycC_1
Tyrocidine synthase 3.
 
    0.440
rutA_2
Pyrimidine monooxygenase RutA.
  
     0.432
AMY55116.1
Hypothetical protein.
  
     0.426
liaS_2
Sensor histidine kinase LiaS.
  
    0.422
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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