Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copRTranscriptional activator protein CopR. (219 aa)    
Predicted Functional Partners:
arlS_2
Signal transduction histidine-protein kinase ArlS.
 
 
 0.966
AMY55523.1
Hypothetical protein.
  
 
 0.956
todS
Sensor histidine kinase TodS.
 
 
0.854
AMY53765.1
Hypothetical protein.
  
 
 0.842
cpxA
Sensor protein CpxA.
 
 
 0.823
mprB_2
Signal transduction histidine-protein kinase/phosphatase MprB.
 
 
 0.805
tcrY_2
Putative sensor histidine kinase TcrY.
 
 
 0.795
senX3
Signal-transduction histidine kinase senX3.
 
 
 0.773
AMY51637.1
Hypothetical protein.
       0.768
tcrY_1
Putative sensor histidine kinase TcrY.
 
 
 0.752
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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