Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yhdG_2Putative amino acid permease YhdG. (484 aa)    
Predicted Functional Partners:
eutB
Ethanolamine ammonia-lyase heavy chain.
 
  
 0.940
eutC
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
 
  
 0.938
fadD3_1
3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase.
   
   0.762
AMY51646.1
Hypothetical protein.
       0.644
acsA_1
Acetyl-coenzyme A synthetase.
       0.618
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
  
 0.576
zitB
Zinc transporter ZitB.
       0.521
AMY52423.1
Hypothetical protein.
   
 0.506
nplT
Neopullulanase.
   
 0.506
ams
Amylosucrase.
   
 0.506
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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