Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY51646.1Hypothetical protein. (179 aa)    
Predicted Functional Partners:
thcA
EPTC-inducible aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
    0.974
acoR_1
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
     0.893
eutC
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
       0.675
eutB
Ethanolamine ammonia-lyase heavy chain.
       0.675
yhdG_2
Putative amino acid permease YhdG.
       0.644
mftF_3
Putative mycofactocin biosynthesis glycosyltransferase MftF.
       0.537
zitB
Zinc transporter ZitB.
       0.524
betA
Oxygen-dependent choline dehydrogenase.
       0.522
acoR_3
Acetoin dehydrogenase operon transcriptional activator AcoR.
 
     0.483
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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