Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51661.1Hypothetical protein. (275 aa)    
Predicted Functional Partners:
liaS_1
Sensor histidine kinase LiaS.
  
    0.699
AMY51659.1
Hypothetical protein.
 
   
 0.694
mftC
Putative mycofactocin radical SAM maturase MftC.
 
   
 0.680
AMY54257.1
Hypothetical protein.
  
     0.660
AMY51668.1
Methanol:N,N-dimethyl-4-nitrosoaniline oxidoreductase.
 
     0.581
mftD_2
Putative mycofactocin system heme/flavin oxidoreductase MftD.
 
     0.563
AMY51666.1
Hypothetical protein.
 
     0.559
AMY53020.1
Hypothetical protein.
  
     0.518
AMY54330.1
Hypothetical protein.
  
     0.499
mftD_1
Putative mycofactocin system heme/flavin oxidoreductase MftD.
 
     0.481
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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