Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lon_1Lon protease. (345 aa)    
Predicted Functional Partners:
AMY51666.1
Hypothetical protein.
 
    0.971
AMY51668.1
Methanol:N,N-dimethyl-4-nitrosoaniline oxidoreductase.
 
   
 0.827
AMY55075.1
Hypothetical protein.
 
    0.786
adhB
Alcohol dehydrogenase 2.
 
   
 0.641
liaS_1
Sensor histidine kinase LiaS.
       0.588
kdhA_2
6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha.
 
   
 0.583
AMY54643.1
Hypothetical protein.
 
   
 0.563
liaR_1
Transcriptional regulatory protein LiaR.
  
    0.515
AMY54806.1
Hypothetical protein.
 
   
 0.506
cdhA_1
Caffeine dehydrogenase subunit alpha.
 
   
 0.496
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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