Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51677.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
AMY55841.1
Hypothetical protein.
  
     0.726
AMY53209.1
Hypothetical protein.
  
     0.671
AMY53711.1
Hypothetical protein.
  
     0.660
AMY53325.1
Hypothetical protein.
  
     0.656
AMY51565.1
Hypothetical protein.
  
     0.622
AMY52218.1
Hypothetical protein.
  
     0.613
AMY53379.1
Hypothetical protein.
  
     0.558
lppW
Putative lipoprotein LppW.
 
     0.553
rsbW_1
Serine-protein kinase RsbW.
  
     0.534
AMY51676.1
Hypothetical protein.
       0.525
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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