Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
hcnC_1Hydrogen cyanide synthase subunit HcnC. (380 aa)    
Predicted Functional Partners:
gbh
Guanidinobutyrase; Belongs to the arginase family.
  
 
 0.913
soxA
Sarcosine oxidase subunit alpha.
 
 
 0.877
soxD
Sarcosine oxidase subunit delta.
 
 
 0.789
lrp_2
Leucine-responsive regulatory protein.
  
    0.778
soxG
Sarcosine oxidase subunit gamma.
 
 
 0.583
AMY51681.1
Hypothetical protein.
       0.515
dmg_1
Dimethylglycine oxidase; Belongs to the GcvT family.
 
 
 0.507
dmg_2
Dimethylglycine oxidase.
  
     0.472
bcpB_1
Putative peroxiredoxin.
       0.437
fadH
2,4-dienoyl-CoA reductase [NADPH].
  
 
 0.428
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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