Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bkdA_13-methyl-2-oxobutanoate dehydrogenase subunit alpha. (360 aa)    
Predicted Functional Partners:
bkdB_1
3-methyl-2-oxobutanoate dehydrogenase subunit beta.
 0.999
bkdB_2
3-methyl-2-oxobutanoate dehydrogenase subunit beta.
 0.999
pdhC_1
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.998
pdhB
Pyruvate dehydrogenase E1 component subunit beta.
 0.996
bkdC
Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex.
 
 0.994
lpd
Dihydrolipoyl dehydrogenase.
 
 
 0.969
pdhD
Dihydrolipoyl dehydrogenase.
 
 
 0.969
lpdC
Dihydrolipoyl dehydrogenase.
 
 
 0.963
vdh
Valine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.959
pdhC_2
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex.
 
 0.942
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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