Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sinRHTH-type transcriptional regulator SinR. (210 aa)    
Predicted Functional Partners:
iaaM
Tryptophan 2-monooxygenase.
 
     0.799
ramA_1
(R)-stereoselective amidase.
       0.773
AMY54712.1
Hypothetical protein.
  
   
 0.721
gbh
Guanidinobutyrase; Belongs to the arginase family.
 
   
 0.700
AMY54160.1
Hypothetical protein.
  
    0.550
kynB
Kynurenine formamidase.
  
    0.550
gltB_1
Glutamate synthase [NADPH] large chain.
     
 0.534
gltB_2
Glutamate synthase [NADPH] large chain.
     
 0.534
cinA_1
CinA-like protein; Belongs to the CinA family.
     
 0.520
AMY55523.1
Hypothetical protein.
     
 0.416
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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