Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dpsDNA protection during starvation protein; Belongs to the Dps family. (204 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.815
alx
Inner membrane protein alx.
       0.751
AMY51703.1
Hypothetical protein.
       0.744
lrtA
Light-repressed protein A; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.591
cdaR_1
Carbohydrate diacid regulator.
 
     0.581
AMY52329.1
NAD(P)H dehydrogenase (quinone).
  
  
 0.574
fldA
Flavodoxin.
  
  
 0.574
osmC
Peroxiredoxin OsmC.
 
  
 0.568
AMY55804.1
Alkyl hydroperoxide reductase subunit C.
  
  
 0.567
ohrB
Organic hydroperoxide resistance protein OhrB.
  
  
 0.479
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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