Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
limB_1Limonene 1,2-monooxygenase. (340 aa)    
Predicted Functional Partners:
AMY51716.1
Hypothetical protein.
 
    0.712
murG_1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
     0.707
AMY51713.1
Hypothetical protein.
 
     0.706
AMY51715.1
Glycogen synthase.
  
    0.674
fliY
Cystine-binding periplasmic protein.
  
  
 0.580
AMY51457.1
Hypothetical protein.
  
     0.517
AMY51717.1
Hypothetical protein.
       0.467
kfoC_1
Chondroitin synthase.
       0.467
AMY53968.1
Hypothetical protein.
 
     0.464
AMY53962.1
Hypothetical protein.
  
     0.452
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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