Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51717.1Hypothetical protein. (327 aa)    
Predicted Functional Partners:
kfoC_1
Chondroitin synthase.
     0.959
AMY51713.1
Hypothetical protein.
 
     0.910
murG_1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
     0.898
AMY51716.1
Hypothetical protein.
 
     0.897
AMY51715.1
Glycogen synthase.
 
     0.855
AMY55445.1
Hypothetical protein.
  
     0.634
AMY54051.1
Hypothetical protein.
  
     0.542
AMY51719.1
Hypothetical protein.
       0.528
AMY53439.1
Hypothetical protein.
  
     0.515
limB_1
Limonene 1,2-monooxygenase.
       0.467
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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