Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY51729.1Hypothetical protein. (397 aa)    
Predicted Functional Partners:
narB
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
 0.917
metB
Cystathionine gamma-synthase.
   
 0.914
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
   
 0.914
sbnA
Putative siderophore biosynthesis protein SbnA.
   
 
 0.904
sir
Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.903
cysJ
Sulfite reductase [NADPH] flavoprotein alpha-component.
     
 0.900
AMY51728.1
Hypothetical protein.
       0.773
prmB_1
50S ribosomal protein L3 glutamine methyltransferase.
     
 0.497
mrpA
Na(+)/H(+) antiporter subunit A.
 
  
 0.481
glpD2_1
Glycerol-3-phosphate dehydrogenase 2; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.466
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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