Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoR_1Copper-sensing transcriptional repressor CsoR. (89 aa)    
Predicted Functional Partners:
AMY51736.1
Hypothetical protein.
 
     0.768
ydfJ_1
Membrane protein YdfJ.
       0.520
furA_1
Transcriptional regulator FurA; Belongs to the Fur family.
     
 0.515
xylB_1
Aryl-alcohol dehydrogenase.
  
  
 0.448
AMY52921.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
  
 0.448
AMY53475.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
  
 0.448
AMY55799.1
S-(hydroxymethyl)mycothiol dehydrogenase.
  
  
 0.448
adhD
Putative alcohol dehydrogenase D.
  
  
 0.448
katG
Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
       0.422
fbpB_3
Diacylglycerol acyltransferase/mycolyltransferase Ag85B.
  
  
 0.408
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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