Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ydfJ_1Membrane protein YdfJ. (717 aa)    
Predicted Functional Partners:
AMY51736.1
Hypothetical protein.
       0.660
AMY51738.1
Hypothetical protein.
 
    0.531
csoR_1
Copper-sensing transcriptional repressor CsoR.
       0.520
accD5_2
Putative propionyl-CoA carboxylase beta chain 5.
  
  
 0.478
accC_2
Biotin carboxylase.
     
 0.472
furA_1
Transcriptional regulator FurA; Belongs to the Fur family.
 
   
 0.462
AMY51740.1
Hypothetical protein.
       0.439
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
    
 
 0.426
AMY53972.1
Hypothetical protein.
  
     0.419
AMY54978.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.