Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51738.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
accC_2
Biotin carboxylase.
       0.749
AMY51740.1
Hypothetical protein.
       0.730
accD5_2
Putative propionyl-CoA carboxylase beta chain 5.
  
    0.726
ywtF
Putative transcriptional regulator YwtF.
   
  
 0.607
AMY53581.1
Putative HTH-type transcriptional regulator.
   
  
 0.600
acdA_3
Acyl-CoA dehydrogenase.
  
    0.598
AMY55641.1
Hypothetical protein.
   
    0.588
cobB_1
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.579
cobB_2
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.579
cdhR_2
HTH-type transcriptional regulator CdhR.
   
  
 0.568
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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