Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
accC_2Biotin carboxylase. (598 aa)    
Predicted Functional Partners:
accD5_2
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.993
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 
 0.993
accD5_3
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.981
accD6
Putative propionyl-CoA carboxylase beta chain 6.
 
 0.978
accD5_1
Putative propionyl-CoA carboxylase beta chain 5.
 
 0.976
kipA_1
KipI antagonist.
 
 
 0.976
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.961
accD3_1
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
 0.944
AMY51379.1
Biotinylated protein TB7.3.
  
 
0.942
accD3_2
Putative acetyl-coenzyme A carboxylase carboxyl transferase subunit beta.
 
 0.942
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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