Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY51752.1Hypothetical protein. (145 aa)    
Predicted Functional Partners:
carA2
Zeta-carotene-forming phytoene desaturase.
 
    0.824
yhdG_5
Putative amino acid permease YhdG.
 
   0.584
AMY51706.1
Hypothetical protein.
 
     0.571
AMY53462.1
Sepiapterin reductase.
 
    0.559
AMY51716.1
Hypothetical protein.
 
    0.523
AMY52866.1
Hypothetical protein.
  
  0.491
pdxK
Pyridoxine kinase.
     
 0.467
murG_1
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
 
     0.448
rsfB_1
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
 
     0.421
AMY55925.1
Acyl-CoA dehydrogenase, short-chain specific.
  
  0.421
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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