Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
carA2Zeta-carotene-forming phytoene desaturase. (530 aa)    
Predicted Functional Partners:
AMY51752.1
Hypothetical protein.
 
    0.824
yhdG_5
Putative amino acid permease YhdG.
       0.773
crtB
All-trans-phytoene synthase.
 
  
 0.645
rsbP_1
Phosphoserine phosphatase RsbP.
 
   
 0.538
bchI
Magnesium-chelatase 38 kDa subunit.
  
  
 0.515
rsbW_1
Serine-protein kinase RsbW.
     
 0.485
AMY51755.1
Hypothetical protein.
       0.474
rsfB_1
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
       0.465
AMY52841.1
Hypothetical protein.
 
   
 0.403
pds
15-cis-phytoene desaturase.
 
   
 0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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