Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dctA_1Aerobic C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (476 aa)    
Predicted Functional Partners:
dctA_2
Aerobic C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
  
 
0.913
AMY51492.1
Hypothetical protein.
   
  
 0.608
hmuU_1
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.492
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
  
 
 0.490
fhuC_1
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
     
 0.486
AMY56078.1
Hypothetical protein.
   
 0.457
AMY55725.1
Hypothetical protein.
   
 
  0.436
hflK
Modulator of FtsH protease HflK.
   
 0.426
AMY54684.1
Hypothetical protein.
    
 0.419
AMY54742.1
Hypothetical protein.
    
 0.419
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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