Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kstR2_1HTH-type transcriptional repressor KstR2. (209 aa)    
Predicted Functional Partners:
AMY51774.1
Hypothetical protein.
 
   
 0.730
bbsG_1
(R)-benzylsuccinyl-CoA dehydrogenase.
  
  
 0.688
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 
 0.664
AMY55523.1
Hypothetical protein.
   
 
 0.656
lcfB_1
Long-chain-fatty-acid--CoA ligase.
  
 0.605
kgtP_1
Alpha-ketoglutarate permease.
     
 0.534
todS
Sensor histidine kinase TodS.
  
 
 0.496
mshD_3
Mycothiol acetyltransferase.
  
 
 0.482
gltB_1
Glutamate synthase [NADPH] large chain.
  
  
 0.478
gltB_2
Glutamate synthase [NADPH] large chain.
  
  
 0.478
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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