Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51775.1Hypothetical protein. (329 aa)    
Predicted Functional Partners:
pleD_1
Response regulator PleD.
 
   
 0.741
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
   0.637
AMY54978.1
Hypothetical protein.
  
   
 0.616
fabF_1
3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.567
AMY52360.1
Hypothetical protein.
  
     0.553
betI_2
HTH-type transcriptional regulator BetI.
  
     0.550
csxA
Exo-beta-D-glucosaminidase.
 
 
 0.536
AMY52063.1
Hypothetical protein.
  
     0.505
abfB
Extracellular exo-alpha-L-arabinofuranosidase.
 
   
 0.504
AMY54981.1
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.503
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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