Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pleD_1Response regulator PleD. (535 aa)    
Predicted Functional Partners:
AMY55523.1
Hypothetical protein.
  
 
 0.983
todS
Sensor histidine kinase TodS.
  
 
 0.982
cph2_1
Phytochrome-like protein cph2.
 
 
 0.981
ykuI
Putative EAL-domain containing protein YkuI.
 
 
 0.980
AMY52576.1
Hypothetical protein.
  
 
 0.969
AMY54980.1
Hypothetical protein.
  
 
 0.969
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
 
 0.959
pleD_2
Response regulator PleD.
 
 
0.951
ydaM
Putative diguanylate cyclase YdaM.
 
 
0.946
AMY53765.1
Hypothetical protein.
  
 
 0.939
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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