rbsA_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rbsA_1

Ribose import ATP-binding protein RbsA. (543 aa)

Predicted Functional Partners:

yjfF

0.996

ytfQ_1

0.993

ytfT

0.993

lsrD

0.877

rbsC_3

0.873

alsC

0.871

rbsC_2

0.865

lacI

0.808

ulaF

0.802

xylH

0.801

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
alsC	rbsA_1	A3L23_03508	A3L23_00420	D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA.	0.871
alsC	ytfQ_1	A3L23_03508	A3L23_00419	D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter periplasmic-binding protein YtfQ.	0.819
lacI	rbsA_1	A3L23_00423	A3L23_00420	Lactose operon repressor.	Ribose import ATP-binding protein RbsA.	0.808
lacI	ulaF	A3L23_00423	A3L23_00425	Lactose operon repressor.	L-ribulose-5-phosphate 4-epimerase UlaF.	0.823
lacI	yjfF	A3L23_00423	A3L23_00422	Lactose operon repressor.	Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.	0.834
lacI	ytfQ_1	A3L23_00423	A3L23_00419	Lactose operon repressor.	ABC transporter periplasmic-binding protein YtfQ.	0.817
lacI	ytfT	A3L23_00423	A3L23_00421	Lactose operon repressor.	Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.	0.830
lsrD	rbsA_1	A3L23_01003	A3L23_00420	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA.	0.877
lsrD	ytfQ_1	A3L23_01003	A3L23_00419	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	ABC transporter periplasmic-binding protein YtfQ.	0.813
rbsA_1	alsC	A3L23_00420	A3L23_03508	Ribose import ATP-binding protein RbsA.	D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.	0.871
rbsA_1	lacI	A3L23_00420	A3L23_00423	Ribose import ATP-binding protein RbsA.	Lactose operon repressor.	0.808
rbsA_1	lsrD	A3L23_00420	A3L23_01003	Ribose import ATP-binding protein RbsA.	Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.	0.877
rbsA_1	rbsC_2	A3L23_00420	A3L23_00918	Ribose import ATP-binding protein RbsA.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.865
rbsA_1	rbsC_3	A3L23_00420	A3L23_03382	Ribose import ATP-binding protein RbsA.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.873
rbsA_1	ulaF	A3L23_00420	A3L23_00425	Ribose import ATP-binding protein RbsA.	L-ribulose-5-phosphate 4-epimerase UlaF.	0.802
rbsA_1	xylH	A3L23_00420	A3L23_00858	Ribose import ATP-binding protein RbsA.	Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.	0.801
rbsA_1	yjfF	A3L23_00420	A3L23_00422	Ribose import ATP-binding protein RbsA.	Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.	0.996
rbsA_1	ytfQ_1	A3L23_00420	A3L23_00419	Ribose import ATP-binding protein RbsA.	ABC transporter periplasmic-binding protein YtfQ.	0.993
rbsA_1	ytfT	A3L23_00420	A3L23_00421	Ribose import ATP-binding protein RbsA.	Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.	0.993
rbsC_2	rbsA_1	A3L23_00918	A3L23_00420	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	Ribose import ATP-binding protein RbsA.	0.865