Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
araA_1L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (494 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 
 0.999
ulaF
L-ribulose-5-phosphate 4-epimerase UlaF.
 
  
 0.967
galM_1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.957
galM_2
Aldose 1-epimerase.
  
 
 0.917
ytfQ_1
ABC transporter periplasmic-binding protein YtfQ.
 
  
 0.811
udh
Uronate dehydrogenase.
     
 0.801
ywqF
UDP-glucose 6-dehydrogenase YwqF.
     
  0.800
fucA
L-fuculose phosphate aldolase.
 
  
 0.781
ytfT
Inner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.726
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.724
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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