Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvaM_1AB hydrolase superfamily protein YvaM. (278 aa)    
Predicted Functional Partners:
bpoC_2
Putative non-heme bromoperoxidase BpoC.
  
     0.629
dehH1_2
Haloacetate dehalogenase H-1.
  
     0.616
acoC
Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system.
  
     0.608
bpoC_1
Putative non-heme bromoperoxidase BpoC.
  
     0.592
hsaD_2
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase.
  
     0.575
lldD_1
Putative L-lactate dehydrogenase.
    
  0.572
cpo_2
Non-heme chloroperoxidase.
  
     0.561
cmpD_1
Bicarbonate transport ATP-binding protein CmpD.
       0.513
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
       0.513
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
       0.513
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (12%) [HD]