Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gdhBNAD-specific glutamate dehydrogenase. (1036 aa)    
Predicted Functional Partners:
garA
Glycogen accumulation regulator GarA.
    
 
 0.895
AMY55006.1
Hypothetical protein.
 
    0.521
puuP_2
Putrescine importer PuuP.
  
    0.520
AMY51823.1
Universal stress protein.
       0.511
cdsA
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
   
    0.498
cph2_6
Phytochrome-like protein cph2.
  
 
 
 0.482
gltB_1
Glutamate synthase [NADPH] large chain.
      
 0.451
gltB_2
Glutamate synthase [NADPH] large chain.
      
 0.451
AMY51639.1
Hypothetical protein.
  
    0.447
AMY55008.1
Hypothetical protein.
  
    0.447
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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