Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gppA_1Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase. (314 aa)    
Predicted Functional Partners:
AMY51856.1
Hypothetical protein.
 
  
 0.992
gppA_2
Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase.
  
  
0.953
relA_2
Bifunctional (p)ppGpp synthase/hydrolase RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.930
ftsL
Cell division protein FtsL.
  
  
 0.920
ywaC_1
GTP pyrophosphokinase YwaC.
     
  0.900
ywaC_2
GTP pyrophosphokinase YwaC.
     
  0.900
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
 
 0.870
AMY54055.1
Hypothetical protein.
 
 
 0.765
AMY54087.1
Hypothetical protein.
 
 
 0.661
aroB_2
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
 
    0.593
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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