Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ctpJPutative cation-transporting P-type ATPase J. (670 aa)    
Predicted Functional Partners:
nmtR
HTH-type transcriptional regulator NmtR.
 
  
 0.767
AMY52488.1
Hypothetical protein.
  
 
 0.686
copZ
Copper chaperone CopZ.
  
 
 0.686
sodC
Cu-Zn superoxide dismutase.
    
 0.463
kmtR_1
HTH-type transcriptional regulator KmtR.
 
  
 0.436
smtB_3
HTH-type transcriptional repressor SmtB.
 
  
 0.410
AMY55523.1
Hypothetical protein.
  
  
 0.401
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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