Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arpA_1A-factor receptor protein. (214 aa)    
Predicted Functional Partners:
tetC
Transposon Tn10 TetC protein.
       0.724
mfd
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
     
 0.597
AMY52083.1
Hypothetical protein.
  
     0.583
mazG
Nucleoside triphosphate pyrophosphohydrolase.
     
 0.537
AMY54587.1
Hypothetical protein.
  
     0.518
AMY54321.1
Hypothetical protein.
  
     0.511
AMY54893.1
Hypothetical protein.
  
     0.486
AMY53245.1
Hypothetical protein.
  
    0.454
AMY54467.1
Hypothetical protein.
  
     0.453
AMY51915.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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