desK_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

desK_1

Sensor histidine kinase DesK. (399 aa)

Predicted Functional Partners:

vraR

0.963

liaR_2

0.840

degU_7

0.839

degU_4

0.838

degU_5

0.833

degU_3

0.832

degU_6

0.831

desR_3

0.829

desR_1

0.824

liaR_1

0.821

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
degU_3	desK_1	A3L23_01933	A3L23_00514	Transcriptional regulatory protein DegU.	Sensor histidine kinase DesK.	0.832
degU_4	desK_1	A3L23_02948	A3L23_00514	Transcriptional regulatory protein DegU.	Sensor histidine kinase DesK.	0.838
degU_5	desK_1	A3L23_03440	A3L23_00514	Transcriptional regulatory protein DegU.	Sensor histidine kinase DesK.	0.833
degU_6	desK_1	A3L23_04147	A3L23_00514	Transcriptional regulatory protein DegU.	Sensor histidine kinase DesK.	0.831
degU_7	desK_1	A3L23_04742	A3L23_00514	Transcriptional regulatory protein DegU.	Sensor histidine kinase DesK.	0.839
desK_1	degU_3	A3L23_00514	A3L23_01933	Sensor histidine kinase DesK.	Transcriptional regulatory protein DegU.	0.832
desK_1	degU_4	A3L23_00514	A3L23_02948	Sensor histidine kinase DesK.	Transcriptional regulatory protein DegU.	0.838
desK_1	degU_5	A3L23_00514	A3L23_03440	Sensor histidine kinase DesK.	Transcriptional regulatory protein DegU.	0.833
desK_1	degU_6	A3L23_00514	A3L23_04147	Sensor histidine kinase DesK.	Transcriptional regulatory protein DegU.	0.831
desK_1	degU_7	A3L23_00514	A3L23_04742	Sensor histidine kinase DesK.	Transcriptional regulatory protein DegU.	0.839
desK_1	desR_1	A3L23_00514	A3L23_00715	Sensor histidine kinase DesK.	Transcriptional regulatory protein DesR.	0.824
desK_1	desR_3	A3L23_00514	A3L23_03809	Sensor histidine kinase DesK.	Transcriptional regulatory protein DesR.	0.829
desK_1	liaR_1	A3L23_00514	A3L23_00302	Sensor histidine kinase DesK.	Transcriptional regulatory protein LiaR.	0.821
desK_1	liaR_2	A3L23_00514	A3L23_04233	Sensor histidine kinase DesK.	Transcriptional regulatory protein LiaR.	0.840
desK_1	vraR	A3L23_00514	A3L23_00515	Sensor histidine kinase DesK.	Response regulator protein VraR.	0.963
desR_1	desK_1	A3L23_00715	A3L23_00514	Transcriptional regulatory protein DesR.	Sensor histidine kinase DesK.	0.824
desR_1	desR_3	A3L23_00715	A3L23_03809	Transcriptional regulatory protein DesR.	Transcriptional regulatory protein DesR.	0.906
desR_3	desK_1	A3L23_03809	A3L23_00514	Transcriptional regulatory protein DesR.	Sensor histidine kinase DesK.	0.829
desR_3	desR_1	A3L23_03809	A3L23_00715	Transcriptional regulatory protein DesR.	Transcriptional regulatory protein DesR.	0.906
liaR_1	desK_1	A3L23_00302	A3L23_00514	Transcriptional regulatory protein LiaR.	Sensor histidine kinase DesK.	0.821