Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51902.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
AMY54094.1
Putative HTH-type transcriptional regulator.
  
   
 0.753
lipF_1
Carboxylesterase LipF.
       0.737
AMY53724.1
Putative ATPase.
 
    0.720
AMY54142.1
Hypothetical protein.
 
     0.714
ubiB_2
Putative protein kinase UbiB.
  
 
 
 0.701
AMY54113.1
Hypothetical protein.
  
     0.687
arsA
Arsenical pump-driving ATPase.
 
    0.630
ctaA
Heme A synthase.
 
  
  0.580
tgs2
Putative diacylglycerol O-acyltransferase tgs2; Belongs to the long-chain O-acyltransferase family.
 
     0.559
AMY56015.1
Hypothetical protein.
  
     0.529
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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