Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sadH_1Putative oxidoreductase SadH; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (300 aa)    
Predicted Functional Partners:
ephD_3
Putative oxidoreductase EphD.
 
    0.907
ephD_4
Putative oxidoreductase EphD.
 
    0.774
fabG_13
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 
 0.742
fabG_6
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 
 0.648
AMY51912.1
Hypothetical protein.
       0.566
isfD_1
Sulfoacetaldehyde reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.467
bamB
Outer membrane protein assembly factor BamB.
  
     0.450
arpA_2
A-factor receptor protein.
       0.433
aftA
Arabinofuranosyltransferase AftA.
 
   
 0.414
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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