rpmB_1 protein (Rhodococcus fascians D188) - STRING interaction network

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Score

rpmB_1

50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)

Predicted Functional Partners:

rpmG2_1

0.998

rpsN

0.996

rpsR1_1

0.993

rpmF_1

0.985

rpmE2

0.982

rplI

0.970

rplE

0.966

rpsF

0.966

rpmI

0.966

rplD

0.965

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplE	A3L23_00257	A3L23_00242	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	0.999
rplD	rplI	A3L23_00257	A3L23_01731	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.995
rplD	rpmB_1	A3L23_00257	A3L23_00592	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.965
rplD	rpmE2	A3L23_00257	A3L23_00590	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L31 type B.	0.865
rplD	rpmF_1	A3L23_00257	A3L23_00589	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.950
rplD	rpmG2_1	A3L23_00257	A3L23_00593	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	0.956
rplD	rpmI	A3L23_00257	A3L23_04065	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.993
rplD	rpsF	A3L23_00257	A3L23_01734	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.993
rplD	rpsN	A3L23_00257	A3L23_00594	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.980
rplD	rpsR1_1	A3L23_00257	A3L23_00595	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S18 1; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.976
rplE	rplD	A3L23_00242	A3L23_00257	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplE	rplI	A3L23_00242	A3L23_01731	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.995
rplE	rpmB_1	A3L23_00242	A3L23_00592	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.966
rplE	rpmE2	A3L23_00242	A3L23_00590	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L31 type B.	0.909
rplE	rpmF_1	A3L23_00242	A3L23_00589	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.953
rplE	rpmG2_1	A3L23_00242	A3L23_00593	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.	0.955
rplE	rpmI	A3L23_00242	A3L23_04065	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.992
rplE	rpsF	A3L23_00242	A3L23_01734	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.989
rplE	rpsN	A3L23_00242	A3L23_00594	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.962
rplE	rpsR1_1	A3L23_00242	A3L23_00595	50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.	30S ribosomal protein S18 1; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.965