Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51954.1Hypothetical protein. (308 aa)    
Predicted Functional Partners:
AMY54468.1
NAD-dependent malic enzyme.
  
  
 0.827
AMY51955.1
Hypothetical protein.
       0.806
rpsR1_1
30S ribosomal protein S18 1; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.766
rpmG2_1
50S ribosomal protein L33 2; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.684
rpmB_1
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.657
AMY51956.1
Hypothetical protein.
       0.641
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
       0.639
rpmF_1
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.540
ycaD
Putative MFS-type transporter YcaD.
  
    0.507
rpmE2
50S ribosomal protein L31 type B.
       0.458
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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