Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY51959.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
AMY51977.1
Hypothetical protein.
  
     0.721
AMY52724.1
Hypothetical protein.
  
     0.697
AMY51957.1
Hypothetical protein.
       0.574
AMY51958.1
Hypothetical protein.
       0.574
AMY55796.1
Hypothetical protein.
  
     0.537
purH
Bifunctional purine biosynthesis protein PurH.
       0.478
purN_1
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.478
AMY51415.1
Hypothetical protein.
  
     0.437
AMY56090.1
Hypothetical protein.
  
     0.434
gltB_1
Glutamate synthase [NADPH] large chain.
  
    0.422
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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