Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
aidB_1Putative acyl-CoA dehydrogenase AidB. (538 aa)    
Predicted Functional Partners:
fadB_3
Fatty acid oxidation complex subunit alpha.
 
 0.922
mtrR_1
HTH-type transcriptional regulator MtrR.
       0.879
fadJ
Fatty acid oxidation complex subunit alpha.
 
 0.856
echA8_1
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.840
fadB_5
Fatty acid oxidation complex subunit alpha.
 
 0.833
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.766
pcaF
Beta-ketoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.762
echA6
Putative enoyl-CoA hydratase echA6; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.760
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.652
AMY51981.1
Hypothetical protein.
       0.617
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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