Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccl(R)-citramalyl-CoA lyase. (307 aa)    
Predicted Functional Partners:
AMY53492.1
Hypothetical protein.
  
 
 0.934
scoA_1
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.933
scoA_2
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.933
yngG
Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
  
 
0.927
acsA_1
Acetyl-coenzyme A synthetase.
 
 
 0.926
smtB_1
Succinyl-CoA--L-malate CoA-transferase beta subunit; Belongs to the CoA-transferase III family.
 
 
  0.923
scoB_1
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.923
scoB_2
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.923
fadA_1
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.922
fadI
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.922
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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