Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AMY51999.1 | lolD | A3L23_00641 | A3L23_00642 | Hypothetical protein. | Lipoprotein-releasing system ATP-binding protein LolD. | 0.563 |
AMY51999.1 | ytrF_1 | A3L23_00641 | A3L23_00643 | Hypothetical protein. | ABC transporter permease YtrF. | 0.563 |
cysS | dnaK_1 | A3L23_02537 | A3L23_01070 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.479 |
cysS | lolD | A3L23_02537 | A3L23_00642 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Lipoprotein-releasing system ATP-binding protein LolD. | 0.585 |
cysS | pheS | A3L23_02537 | A3L23_04068 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.601 |
cysS | tsaD | A3L23_02537 | A3L23_00195 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.514 |
cysS | uppS | A3L23_02537 | A3L23_03008 | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | (2Z,6E)-farnesyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.585 |
dnaK_1 | cysS | A3L23_01070 | A3L23_02537 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.479 |
dnaK_1 | lolD | A3L23_01070 | A3L23_00642 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Lipoprotein-releasing system ATP-binding protein LolD. | 0.567 |
dnaK_1 | tsaD | A3L23_01070 | A3L23_00195 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.565 |
lolD | AMY51999.1 | A3L23_00642 | A3L23_00641 | Lipoprotein-releasing system ATP-binding protein LolD. | Hypothetical protein. | 0.563 |
lolD | cysS | A3L23_00642 | A3L23_02537 | Lipoprotein-releasing system ATP-binding protein LolD. | Cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.585 |
lolD | dnaK_1 | A3L23_00642 | A3L23_01070 | Lipoprotein-releasing system ATP-binding protein LolD. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.567 |
lolD | pheS | A3L23_00642 | A3L23_04068 | Lipoprotein-releasing system ATP-binding protein LolD. | Phenylalanine--tRNA ligase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.629 |
lolD | trxB_1 | A3L23_00642 | A3L23_01807 | Lipoprotein-releasing system ATP-binding protein LolD. | Thioredoxin reductase. | 0.557 |
lolD | tsaD | A3L23_00642 | A3L23_00195 | Lipoprotein-releasing system ATP-binding protein LolD. | tRNA N6-adenosine threonylcarbamoyltransferase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.577 |
lolD | uppS | A3L23_00642 | A3L23_03008 | Lipoprotein-releasing system ATP-binding protein LolD. | (2Z,6E)-farnesyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.529 |
lolD | yknZ | A3L23_00642 | A3L23_00517 | Lipoprotein-releasing system ATP-binding protein LolD. | Putative ABC transporter permease YknZ. | 0.849 |
lolD | ytrF_1 | A3L23_00642 | A3L23_00643 | Lipoprotein-releasing system ATP-binding protein LolD. | ABC transporter permease YtrF. | 0.978 |
lolD | ytrF_2 | A3L23_00642 | A3L23_01586 | Lipoprotein-releasing system ATP-binding protein LolD. | ABC transporter permease YtrF. | 0.565 |
page 1 of 2