Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ytrF_1ABC transporter permease YtrF. (823 aa)    
Predicted Functional Partners:
lolD
Lipoprotein-releasing system ATP-binding protein LolD.
 
 
 0.966
bceA
Bacitracin export ATP-binding protein BceA.
 
 
 0.813
yxdL
ABC transporter ATP-binding protein YxdL.
 
 
 0.793
AMY54198.1
Hypothetical protein.
 
 
 0.735
AMY54196.1
Hypothetical protein.
  
 
 0.701
AMY51999.1
Hypothetical protein.
       0.563
AMY54981.1
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.512
ureD
Urease accessory protein UreD.
  
     0.500
phzD
Putative isochorismatase.
       0.476
AMY55581.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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