Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52009.1Hypothetical protein. (543 aa)    
Predicted Functional Partners:
AMY52010.1
Toxin.
       0.731
AMY52751.1
Putative methyltransferase.
 
 
 
 0.591
AMY52008.1
Hypothetical protein.
 
    
0.548
actP_1
Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.514
yjcH
Inner membrane protein YjcH.
       0.514
AMY51958.1
Hypothetical protein.
  
 
 0.488
bchI
Magnesium-chelatase 38 kDa subunit.
  
 
 0.488
recD_2
RecBCD enzyme subunit RecD.
 
     0.473
AMY51565.1
Hypothetical protein.
  
     0.449
AMY52017.1
Putative inactive lipase.
 
    0.434
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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