Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52010.1Toxin. (143 aa)    
Predicted Functional Partners:
yjcH
Inner membrane protein YjcH.
       0.771
actP_1
Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.755
AMY52009.1
Hypothetical protein.
       0.731
AMY55841.1
Hypothetical protein.
  
     0.704
AMY55129.1
Hypothetical protein.
  
     0.653
AMY53686.1
Hypothetical protein.
  
     0.646
AMY55382.1
Hypothetical protein.
  
     0.642
AMY51963.1
Hypothetical protein.
  
     0.640
AMY54155.1
Hypothetical protein.
  
     0.609
AMY55333.1
Hypothetical protein.
  
     0.605
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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