Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
actP_2Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (580 aa)    
Predicted Functional Partners:
yjcH
Inner membrane protein YjcH.
 
  
 0.984
yehU
Sensor histidine kinase YehU.
 
     0.964
lytR_2
Sensory transduction protein LytR.
 
     0.962
AMY52014.1
Hypothetical protein.
 
     0.948
nhaK_1
Sodium, potassium, lithium and rubidium/H(+) antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.
       0.826
actP_1
Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    
0.808
AMY52017.1
Putative inactive lipase.
  
    0.765
AMY55866.1
Hypothetical protein.
 
  
 0.585
AMY52019.1
Antitoxin.
  
    0.574
AMY52010.1
Toxin.
       0.496
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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