Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsaD_14,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase. (315 aa)    
Predicted Functional Partners:
sigD_2
ECF RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.555
bpoC_1
Putative non-heme bromoperoxidase BpoC.
  
     0.442
AMY54142.1
Hypothetical protein.
  
   0.442
AMY54094.1
Putative HTH-type transcriptional regulator.
  
    0.435
AMY52722.1
Acyl-CoA dehydrogenase, short-chain specific.
  
  0.432
bpoC_2
Putative non-heme bromoperoxidase BpoC.
  
     0.429
soxC
Dibenzothiophene desulfurization enzyme C.
  
  0.427
acoC
Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system.
  
     0.418
yvaM_1
AB hydrolase superfamily protein YvaM.
  
     0.404
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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